fiji imagej fiji imagej rrid scr 002285 matlab 2019b 2022b mathworks rrid scr 001622  (MathWorks Inc)

Journal: Neuron

Article Title: Repeated hippocampal seizures lead to brain-wide reorganization of circuits and seizure propagation pathways

doi: 10.1016/j.neuron.2021.10.010

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains rAAV5-CaMKII-hChR2(H134R)-EYFP University of North Carolina vector core Lot AV4316LM Chemicals, peptides, and recombinant proteins Feraheme AMAG Pharmaceuticals NDC Code 59338-775-01, 59338-775-10 Experimental models: Organisms/strains Sprague-Dawley Charles River Strain Code #001; RRID:RGD_734476 Software and algorithms MATLAB MathWorks RRID:SCR_001622 SPM12 Ashburner et al., 2014 RRID:SCR_007037 NiftyReg Modat et al., 2010 , 2014 RRID:SCR_006593 Other 7T Preclinical MRI Scanner Bruker BioSpec series; Stanford Center for Innovation in In-Vivo Imaging Open in a separate window KEY RESOURCES TABLE.

Techniques: Plasmid Preparation, Recombinant, Software, In Vivo Imaging

Journal: Current biology : CB

Article Title: Disparate insults relevant to schizophrenia converge on impaired spike synchrony and weaker synaptic interactions in prefrontal local circuits

doi: 10.1016/j.cub.2021.10.009

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Phencyclidine hydrochloride Sigma-Aldrich P3029 Experimental models: Organisms/strains Rhesus macaque (Macaca mulatta) N/A N/A Mouse: Nestin-Cre mice (strain: B6.Cg (SJL)-TgN(NesCre)1Kln) Jackson Labs Stock #003771 Mouse: Dgcr8flox/flox mice (strain: B6.Cg-Dgcr8tm1.1Blel/Mmjax;) Jackson Labs Stock #0032051 Deposited data NHP and mouse spiking and LFP data This study https://data.mendeley.com/datasets/y9d3yx4xj6/draft?a=270d6c1c-70ec-480d-a727-a64eb7c7d24c Software and algorithms MATLAB MathWorks RRID:SCR_001622 Transfer entropy Matlab Toolbox 38 https://code.google.com/archive/p/transfer-entropy-toolbox/ N/A FieldTrip Matlab Toolbox 114 https://www.fieldtriptoolbox.org/download.php RRID:SCR_004849 Open in a separate window KEY RESOURCES TABLE.

Techniques: Recombinant, Software

Journal: Current biology : CB

Article Title: Disparate insults relevant to schizophrenia converge on impaired spike synchrony and weaker synaptic interactions in prefrontal local circuits

doi: 10.1016/j.cub.2021.10.009

Figure Lengend Snippet: Influence of drug condition (A, B; monkeys) and genotype (C, D; mice) on LFP power (A, C) and pairwise phase consistency (PPC) between spikes and LFPs (B, D). LFP signals were convolved with a set of complex Morlet wavelets in the frequency range of 1–100 Hz using the Matlab FieldTrip114 toolbox. After assigning phase angles to each spike (relative to LFP oscillations at a given frequency), PPC is defined as the mean cosine between the phase angles of all possible pairs of spikes, capturing the tendency for spikes to occur at consistent phases of LFP oscillations64. (A, C) Mean LFP power spectra in monkeys (A) and mice (C). LFP power was significantly reduced by blocking NMDAR in monkeys and hemizygous deletion of Dgcr8 in mice (black dots above horizontal axis indicate p < 0.05 between conditions by t-test at each frequency, FDR corrected for the number of tests using the Benjamini-Hochberg method). Error bars indicate SEM over LFP channels (electrodes). The dip at 60 Hz in the monkey power spectra reflects notch filtering. (B, D) Median PPC as a function of frequency in monkeys (B) and mice (D). PPC was significantly reduced by blocking NMDAR in monkeys (NSaline = 960 neurons, NDrug= 763 neurons) and hemizygous deletion of Dgcr8 in mice (NWT = 79 neurons, NDgcr8 = 128 neurons) (black dots above horizontal axis indicate p < 0.05 between conditions by Wilcoxon Rank Sum test at each frequency, FDR corrected for the number of tests using the Benjamini-Hochberg method).

Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Phencyclidine hydrochloride Sigma-Aldrich P3029 Experimental models: Organisms/strains Rhesus macaque (Macaca mulatta) N/A N/A Mouse: Nestin-Cre mice (strain: B6.Cg (SJL)-TgN(NesCre)1Kln) Jackson Labs Stock #003771 Mouse: Dgcr8flox/flox mice (strain: B6.Cg-Dgcr8tm1.1Blel/Mmjax;) Jackson Labs Stock #0032051 Deposited data NHP and mouse spiking and LFP data This study https://data.mendeley.com/datasets/y9d3yx4xj6/draft?a=270d6c1c-70ec-480d-a727-a64eb7c7d24c Software and algorithms MATLAB MathWorks RRID:SCR_001622 Transfer entropy Matlab Toolbox 38 https://code.google.com/archive/p/transfer-entropy-toolbox/ N/A FieldTrip Matlab Toolbox 114 https://www.fieldtriptoolbox.org/download.php RRID:SCR_004849 Open in a separate window KEY RESOURCES TABLE.

Techniques: Blocking Assay

Journal: Current biology : CB

Article Title: Disparate insults relevant to schizophrenia converge on impaired spike synchrony and weaker synaptic interactions in prefrontal local circuits

doi: 10.1016/j.cub.2021.10.009

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Phencyclidine hydrochloride Sigma-Aldrich P3029 Experimental models: Organisms/strains Rhesus macaque (Macaca mulatta) N/A N/A Mouse: Nestin-Cre mice (strain: B6.Cg (SJL)-TgN(NesCre)1Kln) Jackson Labs Stock #003771 Mouse: Dgcr8flox/flox mice (strain: B6.Cg-Dgcr8tm1.1Blel/Mmjax;) Jackson Labs Stock #0032051 Deposited data NHP and mouse spiking and LFP data This study https://data.mendeley.com/datasets/y9d3yx4xj6/draft?a=270d6c1c-70ec-480d-a727-a64eb7c7d24c Software and algorithms MATLAB MathWorks RRID:SCR_001622 Transfer entropy Matlab Toolbox 38 https://code.google.com/archive/p/transfer-entropy-toolbox/ N/A FieldTrip Matlab Toolbox 114 https://www.fieldtriptoolbox.org/download.php RRID:SCR_004849 Open in a separate window KEY RESOURCES TABLE.

Techniques: Recombinant, Software